Sunday, February 2, 2014

Boxplot with mean and standard deviation in ggPlot2 (plus Jitter)

When you create a boxplot in R, it automatically computes median, first and third quartile ("hinges") and 95% confidence interval of median ("notches").

But we would like to change the default values of boxplot graphics with the mean, the mean + standard deviation, the mean - S.D., the min and the max values.
Here is an example solved using ggplot2 package. Plus here are represented points (the single values) jittered horizontally.

9 comments:

  1. "we would like to change the default values of boxplot graphics"

    Have you also considered changing the value of pi to 2.0 and renaming the mean as "the Oxford-Meier-Blubb"? Please, don't do any of these three. There are enough recipients struggeling with the meaning of a boxplot. If there finally are boxplot-like-figures that are not boxplots, it's going to hurt. Please find an alternative way to display the results.

    Cheers,
    Bernhard

    ReplyDelete
  2. @Duleep Samuel
    at the end of the code, type: print(p1)

    ReplyDelete
  3. thanks for rectifying, now the code rocks

    ReplyDelete
  4. Wonderful! I'm writing a report with a deadline coming soon, and this is exactly what I needed!

    Ciao!

    ReplyDelete
  5. Hi, great post, but... i have a question, your function calculate the mean-sd, mean+sd, which i consider is the box of the boxplot, and min and max values, which i supose are the bars... but why the graph title says: 95%CI? not should be "mean +-SD?

    ReplyDelete
    Replies
    1. your point is valid! it is not 95% CI. This is 68% and if you want to have 95% CI you should change the function to mean(x) -+ 3*sd(x)

      Delete
  6. Please elaborate it more . Ist time reader who dnt know about this could not understand it

    ReplyDelete
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